☰ Navigation Tabs
Crystal structure of an apo Transferrin-Receptor-Binding cystine-dense peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 PEG 3350, Bis-tris, AmSO4
Crystal Properties Matthews coefficient Solvent content 1.63 24.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.656 α = 90 b = 37.656 β = 90 c = 190.198 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ Osmic VariMax HF 2019-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 99 0.102 0.109 0.039 7.2 7.1 5016
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 90.5 0.28 0.337 0.183 0.858 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.55 26.89 4712 238 98.76 0.2237 0.221 0.2236 0.2792 0.2751 RANDOM 32.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.26 4.26 -8.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.313 r_dihedral_angle_4_deg 21.955 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 4.463 r_angle_refined_deg 1.427 r_angle_other_deg 1.263 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.313 r_dihedral_angle_4_deg 21.955 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 4.463 r_angle_refined_deg 1.427 r_angle_other_deg 1.263 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1126 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing