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Structure of Aedes aegypti OBP22 in the complex with linoleic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 PEG 3350 12 w/v, 0.1M sodium HEPES, 4mM cadmium chloride, 4mM cobalt chloride, 4mM magnesium chloride
Crystal Properties Matthews coefficient Solvent content 2.05 40.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.964 α = 90 b = 42.843 β = 92.78 c = 49.32 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 200K-A VariMax Cu-HF 2018-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 27.95 99.92 0.0651 0.06736 0.01717 0.999 45.41 15.3 10076 17.38
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.916 99.7 0.106 0.1101 0.02926 0.998 28.57 14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 28 9084 1009 99.86 0.16975 0.16583 0.1678 0.2063 0.2087 RANDOM 21.116
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.03 -0.08 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.758 r_dihedral_angle_4_deg 24.047 r_dihedral_angle_3_deg 13.602 r_dihedral_angle_1_deg 5.493 r_long_range_B_refined 4.255 r_long_range_B_other 4.254 r_scangle_other 2.298 r_mcangle_other 1.585 r_mcangle_it 1.584 r_scbond_it 1.368
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.758 r_dihedral_angle_4_deg 24.047 r_dihedral_angle_3_deg 13.602 r_dihedral_angle_1_deg 5.493 r_long_range_B_refined 4.255 r_long_range_B_other 4.254 r_scangle_other 2.298 r_mcangle_other 1.585 r_mcangle_it 1.584 r_scbond_it 1.368 r_scbond_other 1.367 r_angle_refined_deg 1.063 r_mcbond_it 0.989 r_mcbond_other 0.987 r_angle_other_deg 0.381 r_chiral_restr 0.065 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 986 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing