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Structure of Aedes aegypti OBP22
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 PEG 3350 12 w/v, 0.1M sodium HEPES, 6mM cadmium chloride, 6mM magnesium chloride
Crystal Properties Matthews coefficient Solvent content 2.02 39.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.775 α = 90 b = 43.046 β = 91.73 c = 48.416 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 X 200K-A VariMax Cu-HF 2019-01-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 23.84 99.84 0.05241 0.05241 0.01289 1 48.21 15 9895 18.32
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.916 99.07 0.1163 0.1209 0.03251 0.997 25.59 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 23.86 8902 981 99.76 0.18681 0.18336 0.1887 0.2191 0.2344 RANDOM 20.974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.79 -0.32 1.35 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.096 r_dihedral_angle_4_deg 25.426 r_dihedral_angle_3_deg 12.805 r_dihedral_angle_1_deg 5.436 r_long_range_B_refined 4.771 r_long_range_B_other 4.55 r_scangle_other 2.657 r_mcangle_other 1.841 r_mcangle_it 1.84 r_scbond_it 1.586
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.096 r_dihedral_angle_4_deg 25.426 r_dihedral_angle_3_deg 12.805 r_dihedral_angle_1_deg 5.436 r_long_range_B_refined 4.771 r_long_range_B_other 4.55 r_scangle_other 2.657 r_mcangle_other 1.841 r_mcangle_it 1.84 r_scbond_it 1.586 r_scbond_other 1.585 r_angle_other_deg 1.285 r_angle_refined_deg 1.232 r_mcbond_it 1.129 r_mcbond_other 1.123 r_chiral_restr 0.061 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 938 Nucleic Acid Atoms Solvent Atoms 124 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing