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Crystal Structure of Leporine Serum Albumin in Complex with Ketoprofen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4F5V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 8% PPG 400, 0.2 M ammonium acetate, 16% PEG 3350, 0.1M TRIS
Crystal Properties Matthews coefficient Solvent content 2.3 46.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.69 α = 90 b = 79.48 β = 90 c = 103.84 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2012-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.918 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.8 0.046 1 26.3 7.3 48629 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.7 1.223 0.677 1.94 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4F5V 1.9 30.08 47209 1401 99.75 0.19172 0.18996 0.194 0.25263 0.2556 RANDOM 50.529
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.79 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.466 r_dihedral_angle_4_deg 19.945 r_dihedral_angle_3_deg 16.363 r_long_range_B_refined 9.171 r_dihedral_angle_1_deg 6.073 r_mcangle_it 3.448 r_scbond_it 2.832 r_mcbond_it 2.254 r_angle_refined_deg 2.014 r_chiral_restr 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.466 r_dihedral_angle_4_deg 19.945 r_dihedral_angle_3_deg 16.363 r_long_range_B_refined 9.171 r_dihedral_angle_1_deg 6.073 r_mcangle_it 3.448 r_scbond_it 2.832 r_mcbond_it 2.254 r_angle_refined_deg 2.014 r_chiral_restr 0.142 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4618 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing