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Crystal Structure of Equine Serum Albumin in Complex with Ibuprofen
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ZBQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 293 75% Tacsimate at pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.73 54.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.58 α = 90 b = 93.58 β = 90 c = 141.85 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Mirrors 2011-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 1.0393 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.54 50 100 0.117 14.4 6 23211 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.54 2.64 100 1.181 2.1 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4ZBQ 2.54 50 22079 1132 99.97 0.17345 0.16971 0.1746 0.24569 0.2436 RANDOM 57.185
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 0.53 1.06 -3.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.539 r_dihedral_angle_3_deg 19.286 r_dihedral_angle_4_deg 18.48 r_long_range_B_refined 8.136 r_dihedral_angle_1_deg 6.409 r_mcangle_it 4.12 r_scbond_it 4.011 r_mcbond_it 2.634 r_angle_refined_deg 2.171 r_chiral_restr 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.539 r_dihedral_angle_3_deg 19.286 r_dihedral_angle_4_deg 18.48 r_long_range_B_refined 8.136 r_dihedral_angle_1_deg 6.409 r_mcangle_it 4.12 r_scbond_it 4.011 r_mcbond_it 2.634 r_angle_refined_deg 2.171 r_chiral_restr 0.15 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4568 Nucleic Acid Atoms Solvent Atoms 101 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing