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Crystal structure of a CRISPR Cas-related protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 0.1 M ammonium acetate, 0.015 M magnesium acetate, 0.05 M sodium cacodylate, 10% v/v 2-propanol
Crystal Properties Matthews coefficient Solvent content 2.86 56.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.768 α = 90 b = 95.294 β = 112.76 c = 77.337 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2018-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97868 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 47.65 99.2 0.077 0.083 0.032 0.999 16 6.7 59861
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 98.7 1.371 1.487 0.569 0.641 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 39.5 49263 2554 99.22 0.2133 0.2115 0.2215 0.2467 0.252 46.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.09 -1.39 1.17 -1.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.757 r_dihedral_angle_4_deg 17.236 r_dihedral_angle_3_deg 13.909 r_dihedral_angle_1_deg 6.978 r_mcangle_it 2.422 r_angle_refined_deg 1.576 r_mcbond_it 1.519 r_mcbond_other 1.519 r_angle_other_deg 1.35 r_chiral_restr 0.074
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.757 r_dihedral_angle_4_deg 17.236 r_dihedral_angle_3_deg 13.909 r_dihedral_angle_1_deg 6.978 r_mcangle_it 2.422 r_angle_refined_deg 1.576 r_mcbond_it 1.519 r_mcbond_other 1.519 r_angle_other_deg 1.35 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6020 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction SHELXDE phasing XDS data reduction