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Crystal structure of Csm6 in complex with cdA4 by soaking cdA4 into Csm6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 293 10% PEG 8K, 0.2 M NaCl, 0.1 M
Na/K phosphate pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.39 48.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.283 α = 90 b = 164.471 β = 90 c = 111.19 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2019-02-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 99.8 11 12.6 32217
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.64
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.55 48.57 28036 3160 99.08 0.22942 0.22443 0.2252 0.27346 0.2686 RANDOM 66.317
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.89 -4.45 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.739 r_dihedral_angle_4_deg 18.138 r_dihedral_angle_3_deg 16.955 r_dihedral_angle_1_deg 6.51 r_long_range_B_refined 4.802 r_long_range_B_other 4.801 r_mcangle_it 2.575 r_mcangle_other 2.575 r_scangle_other 2.303 r_mcbond_it 1.446
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.739 r_dihedral_angle_4_deg 18.138 r_dihedral_angle_3_deg 16.955 r_dihedral_angle_1_deg 6.51 r_long_range_B_refined 4.802 r_long_range_B_other 4.801 r_mcangle_it 2.575 r_mcangle_other 2.575 r_scangle_other 2.303 r_mcbond_it 1.446 r_mcbond_other 1.446 r_angle_refined_deg 1.282 r_scbond_it 1.275 r_scbond_other 1.275 r_angle_other_deg 1.132 r_chiral_restr 0.044 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6890 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 168
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing