6O6V

Crystal structure of Csm6 in complex with cA4 by soaking cA4 into Csm6


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6O6S 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.229310% PEG 8K, 0.2 M NaCl, 0.1 M Na/K phosphate pH 6.2
Crystal Properties
Matthews coefficientSolvent content
2.4148.99

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 103.993α = 90
b = 164.414β = 90
c = 111.324γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2018-11-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 24-ID-E0.9791APS24-ID-E

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.355099.70.0798.710.639627
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.352.430.548

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT6O6S2.3548.5337612199399.450.229270.22710.27054RANDOM65.01
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.46-2.41-2.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.891
r_dihedral_angle_3_deg16.998
r_dihedral_angle_4_deg15.439
r_long_range_B_refined6.98
r_long_range_B_other6.98
r_dihedral_angle_1_deg6.312
r_scangle_other4.06
r_mcangle_it3.674
r_mcangle_other3.673
r_scbond_it2.323
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.891
r_dihedral_angle_3_deg16.998
r_dihedral_angle_4_deg15.439
r_long_range_B_refined6.98
r_long_range_B_other6.98
r_dihedral_angle_1_deg6.312
r_scangle_other4.06
r_mcangle_it3.674
r_mcangle_other3.673
r_scbond_it2.323
r_scbond_other2.323
r_mcbond_it2.2
r_mcbond_other2.2
r_angle_refined_deg1.26
r_angle_other_deg1.06
r_chiral_restr0.045
r_bond_refined_d0.003
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6890
Nucleic Acid Atoms
Solvent Atoms22
Heterogen Atoms176

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing