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Crystal structure of Apo Csm6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 10% PEG 8K, 0.2 M NaCl, 0.1 M
Na/K phosphate pH 6.2
Crystal Properties Matthews coefficient Solvent content 2.46 49.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.139 α = 90 b = 163.917 β = 90 c = 111.459 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 48.53 0.068 25271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.74
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.65 48.53 25271 2845 98.83 0.21166 0.20672 0.2088 0.25604 0.2533 RANDOM 71.028
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.15 -4.04 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.035 r_dihedral_angle_3_deg 16.938 r_dihedral_angle_4_deg 16.613 r_long_range_B_other 8.699 r_long_range_B_refined 8.698 r_dihedral_angle_1_deg 6.827 r_scangle_other 5.856 r_mcangle_it 5.465 r_mcangle_other 5.465 r_scbond_it 3.499
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.035 r_dihedral_angle_3_deg 16.938 r_dihedral_angle_4_deg 16.613 r_long_range_B_other 8.699 r_long_range_B_refined 8.698 r_dihedral_angle_1_deg 6.827 r_scangle_other 5.856 r_mcangle_it 5.465 r_mcangle_other 5.465 r_scbond_it 3.499 r_scbond_other 3.498 r_mcbond_it 3.374 r_mcbond_other 3.369 r_angle_refined_deg 1.307 r_angle_other_deg 1.091 r_chiral_restr 0.05 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6890 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHENIX phasing