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BOVINE SALIVARY PROTEIN FORM 30B WITH OLEIC ACID
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5WD6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291.15 0.1M HEPES PH 7.5, 0.2M CALCIUM CHLORIDE, 9% PEG 3350, 5% ISOPROPYL ALCOHOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291.15K
Crystal Properties Matthews coefficient Solvent content 2.66 53.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.75 α = 90 b = 61.4 β = 107.74 c = 91.09 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 86.76 99.8 0.062 0.068 0.027 0.997 15 5.7 19718
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 99.6 0.241 0.267 0.113 0.985 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5WD6 2.3 48.7 18652 980 99.32 0.22525 0.22311 0.2276 0.26505 0.2621 RANDOM 69.715
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.7 -0.95 5.16 -1.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.649 r_dihedral_angle_4_deg 17.178 r_dihedral_angle_3_deg 16.171 r_long_range_B_refined 7.108 r_long_range_B_other 7.105 r_dihedral_angle_1_deg 6.876 r_scangle_other 2.119 r_mcangle_it 1.73 r_mcangle_other 1.729 r_angle_refined_deg 1.407
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.649 r_dihedral_angle_4_deg 17.178 r_dihedral_angle_3_deg 16.171 r_long_range_B_refined 7.108 r_long_range_B_other 7.105 r_dihedral_angle_1_deg 6.876 r_scangle_other 2.119 r_mcangle_it 1.73 r_mcangle_other 1.729 r_angle_refined_deg 1.407 r_scbond_it 1.302 r_scbond_other 1.302 r_angle_other_deg 1.219 r_mcbond_it 1.037 r_mcbond_other 1.03 r_chiral_restr 0.064 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2930 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 43
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling MOLREP phasing