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Recombinant Human Insulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5VIZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 298 PEG 6000 30%
Crystal Properties Matthews coefficient Solvent content 3.41 63.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.633 α = 90 b = 77.633 β = 90 c = 77.633 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 130 mm 2017-05-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 50 100 0.043 0.421 0.646 67.3 7.7 10867
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.61 0.421 0.646
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5VIZ 1.58 31.71 9698 1097 99.35 0.18346 0.18154 0.191 0.20112 0.2155 RANDOM 23.648
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.986 r_dihedral_angle_3_deg 12.117 r_dihedral_angle_1_deg 7.419 r_long_range_B_refined 6.696 r_long_range_B_other 6.679 r_scangle_other 5.117 r_mcangle_other 4.537 r_mcangle_it 4.399 r_dihedral_angle_4_deg 3.716 r_scbond_it 3.377
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.986 r_dihedral_angle_3_deg 12.117 r_dihedral_angle_1_deg 7.419 r_long_range_B_refined 6.696 r_long_range_B_other 6.679 r_scangle_other 5.117 r_mcangle_other 4.537 r_mcangle_it 4.399 r_dihedral_angle_4_deg 3.716 r_scbond_it 3.377 r_scbond_other 3.29 r_mcbond_it 2.839 r_mcbond_other 2.347 r_angle_refined_deg 1.983 r_angle_other_deg 1.651 r_chiral_restr 0.115 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 398 Nucleic Acid Atoms Solvent Atoms 36 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CrystalClear phasing