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FGFR4 complex with N-(2-((5-((2,6-dichloro-3,5-dimethoxybenzyl)oxy)pyrimidin-2-yl)amino)-3-fluorophenyl)acrylamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4XCU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 291 100mM Bis-tris pH 4.5, 200mM Lithium sulphate, 16% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.67 53.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.04 α = 90 b = 63.04 β = 90 c = 181.953 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 59.57 99.8 0.051 0.998 11.9 28 17211
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98 0.7 0.498 0.9 27.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4xcu 2.3 59.57 16169 856 99.49 0.22487 0.22246 0.2307 0.27123 0.2696 RANDOM 49.127
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 0.51 -1.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.108 r_dihedral_angle_4_deg 14.68 r_dihedral_angle_3_deg 14.575 r_long_range_B_refined 7.493 r_long_range_B_other 7.483 r_dihedral_angle_1_deg 6.465 r_scangle_other 5.577 r_mcangle_it 5.483 r_mcangle_other 5.482 r_scbond_it 3.807
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.108 r_dihedral_angle_4_deg 14.68 r_dihedral_angle_3_deg 14.575 r_long_range_B_refined 7.493 r_long_range_B_other 7.483 r_dihedral_angle_1_deg 6.465 r_scangle_other 5.577 r_mcangle_it 5.483 r_mcangle_other 5.482 r_scbond_it 3.807 r_mcbond_it 3.704 r_scbond_other 3.684 r_mcbond_other 3.678 r_angle_refined_deg 1.623 r_angle_other_deg 0.988 r_chiral_restr 0.083 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2035 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing