6NU4
Solution structure of the Arabidopsis thaliana RALF8 peptide
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
2 | 3D HNCACB | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
3 | 3D CBCA(CO)NH | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
4 | 3D HN(CA)CO | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
5 | 3D HNCO | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
11 | 2D 1H-13C HSQC | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
10 | 3D C(CO)NH | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
9 | 3D HBHA(CO)NH | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
8 | 3D HCCH-TOCSY | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
7 | 3D 1H-15N NOESY | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 600 |
6 | 3D 1H-13C NOESY aliphatic | 1.0 mM [U-13C; U-15N] Rapid ALkalinization Factor-8 (RALF8) | 90% H2O/10% D2O | 200 mM | 6 | 1 atm | 298 | Varian VNMRS 800 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | VNMRS | 600 |
2 | Varian | VNMRS | 800 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
molecular dynamics | torsion angle dynamics, simulated annealing | PONDEROSA-C/S |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | VNMR | Varian | |
5 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
6 | processing | SMILE | J. Ying, F. Delaglio, D.A. Torchia, and A. Bax | |
2 | peak picking | NMRFAM-SPARKY | W. Lee, M. Tonelli, J.L. Markley | |
7 | chemical shift assignment | NMRFAM-SPARKY | W. Lee, M. Tonelli, J.L. Markley | |
3 | chemical shift assignment | I-PINE | W. Lee, A. Bahrami, H. Dashti, H.R. Eghbalnia, M. Tonelli, W.M. Westler, J.L. Markley | |
4 | structure calculation | TALOS-N | Y. Shen, A. Bax | |
8 | structure calculation | PECAN | Eghbalnia, Wang, Bahrami, Assadi, and Markley | |
9 | structure calculation | PONDEROSA-C/S | W. Lee, J.L. Stark, J.L. Markley | |
10 | structure calculation | X-PLOR NIH | Schwieters, Kuszewski, Tjandra and Clore | |
12 | structure calculation | AUDANA | W. Lee, C.M. Petit, G. Cornilescu, J.L. Stark, J.L. Markley | |
11 | refinement | PONDEROSA-C/S | W. Lee, J.L. Stark, J.L. Markley |