☰ Navigation Tabs
TRK-A IN COMPLEX WITH LIGAND 6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.10M KH2PO4/ 0.10M NaH2PO4/ 0.1M MES/NaOH pH = 6.00 and 1.9M NaCl (cryo: 25% glycerol in reservoir), or 18% (w/v) PEG 3350, 0.2M CaCl2, 0.10M, MES pH = 6.50 (cryo: direct).
Crystal Properties Matthews coefficient Solvent content 2.54 51.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.075 α = 90 b = 52.075 β = 90 c = 227.072 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2015-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 75.69 99.4 0.054 18.74 4.2 25374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.22 98.6 0.427 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.97 45.14 23394 1980 99.39 0.18362 0.18063 0.19 0.21805 0.223 RANDOM 32.164
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.15 0.31 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.897 r_dihedral_angle_4_deg 16.068 r_dihedral_angle_3_deg 14.942 r_dihedral_angle_1_deg 6.731 r_long_range_B_refined 6.437 r_long_range_B_other 6.38 r_scangle_other 4.814 r_mcangle_it 3.693 r_mcangle_other 3.692 r_scbond_it 3.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.897 r_dihedral_angle_4_deg 16.068 r_dihedral_angle_3_deg 14.942 r_dihedral_angle_1_deg 6.731 r_long_range_B_refined 6.437 r_long_range_B_other 6.38 r_scangle_other 4.814 r_mcangle_it 3.693 r_mcangle_other 3.692 r_scbond_it 3.234 r_scbond_other 3.233 r_mcbond_it 2.481 r_mcbond_other 2.468 r_angle_refined_deg 1.88 r_angle_other_deg 1.487 r_chiral_restr 0.096 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2423 Nucleic Acid Atoms Solvent Atoms 131 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Coot model building PHASER phasing