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TRK-A IN COMPLEX WITH LIGAND 9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 277 0.1M KH2PO4/ 0.1M NaH2PO4/ 0.1M MES/NaOH pH 6.0 and 1.9M NaCl (cryo: 25% glycerol in reservoir), or 18% (w/v) PEG 3350, 0.2M CaCl2, 0.1M, MES pH = 6.50 (cryo: direct).
Crystal Properties Matthews coefficient Solvent content 2.66 53.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.994 α = 90 b = 51.994 β = 90 c = 228.163 γ = 120
Symmetry Space Group P 31 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2015-11-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 76.05 98.7 19.45 4.1 15796
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.31 2.56 97.2 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.31 45.07 14583 1213 98.74 0.1924 0.1874 0.1949 0.25498 0.2552 RANDOM 50.252
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.11 0.21 -0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.394 r_dihedral_angle_4_deg 20.989 r_dihedral_angle_3_deg 17.44 r_long_range_B_refined 8.7 r_long_range_B_other 8.688 r_dihedral_angle_1_deg 7.356 r_scangle_other 6.372 r_mcangle_it 5.235 r_mcangle_other 5.224 r_scbond_it 4.039
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.394 r_dihedral_angle_4_deg 20.989 r_dihedral_angle_3_deg 17.44 r_long_range_B_refined 8.7 r_long_range_B_other 8.688 r_dihedral_angle_1_deg 7.356 r_scangle_other 6.372 r_mcangle_it 5.235 r_mcangle_other 5.224 r_scbond_it 4.039 r_scbond_other 4.039 r_mcbond_it 3.411 r_mcbond_other 3.388 r_angle_refined_deg 1.898 r_angle_other_deg 1.37 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2339 Nucleic Acid Atoms Solvent Atoms 46 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Coot model building PHASER phasing