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Crystal structure of human CD160 V58M mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.2 M Sodium Formate, 0.1 M Tris, pH8.5 and 30% (W/V) PEG4000
Crystal Properties Matthews coefficient Solvent content 2.12 41.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.662 α = 90 b = 54.06 β = 90 c = 92.604 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2014-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.97931 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 99.6 0.106 18.9 5 17092
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 1.98 0.433
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.95 20 16088 854 99.24 0.21974 0.21714 0.2242 0.26974 0.27 RANDOM 24.415
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1 1.42 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.548 r_dihedral_angle_4_deg 19.604 r_dihedral_angle_3_deg 14.71 r_dihedral_angle_1_deg 7.219 r_long_range_B_other 6.473 r_long_range_B_refined 6.467 r_scangle_other 5.123 r_mcangle_it 3.402 r_mcangle_other 3.4 r_scbond_it 3.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.548 r_dihedral_angle_4_deg 19.604 r_dihedral_angle_3_deg 14.71 r_dihedral_angle_1_deg 7.219 r_long_range_B_other 6.473 r_long_range_B_refined 6.467 r_scangle_other 5.123 r_mcangle_it 3.402 r_mcangle_other 3.4 r_scbond_it 3.297 r_scbond_other 3.295 r_mcbond_it 2.386 r_mcbond_other 2.325 r_angle_refined_deg 2.006 r_angle_other_deg 1.05 r_chiral_restr 0.114 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1695 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELXS phasing