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CopC from Pseudomonas fluorescens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2C9Q PDB entry 2C9Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.7 293 2.5 M ammonium sulfate, 0.1 M Bis-Tris propane, pH 6.7
Crystal Properties Matthews coefficient Solvent content 2.02 39.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 30.034 α = 90 b = 35.565 β = 90 c = 95.649 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-04-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 33.36 92.72 12.2 2.4 56023
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.03
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2C9Q 1 33.36 49387 2611 92.72 0.14995 0.14881 0.1586 0.17178 0.1802 RANDOM 11.624
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.56 1.24 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.947 r_sphericity_free 17.412 r_dihedral_angle_4_deg 13.501 r_dihedral_angle_3_deg 11.018 r_sphericity_bonded 8.243 r_dihedral_angle_1_deg 6.958 r_long_range_B_refined 2.813 r_long_range_B_other 2.075 r_scbond_it 1.385 r_angle_refined_deg 1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.947 r_sphericity_free 17.412 r_dihedral_angle_4_deg 13.501 r_dihedral_angle_3_deg 11.018 r_sphericity_bonded 8.243 r_dihedral_angle_1_deg 6.958 r_long_range_B_refined 2.813 r_long_range_B_other 2.075 r_scbond_it 1.385 r_angle_refined_deg 1.24 r_scangle_other 1.197 r_scbond_other 0.943 r_rigid_bond_restr 0.922 r_angle_other_deg 0.899 r_mcangle_other 0.897 r_mcangle_it 0.896 r_mcbond_it 0.654 r_mcbond_other 0.644 r_chiral_restr 0.059 r_bond_refined_d 0.006 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 719 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 15
Software Software Software Name Purpose HKL-2000 data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement