☰ Navigation Tabs
RHODOCETIN IN COMPLEX WITH THE INTEGRIN ALPHA2-A DOMAIN WITH CHROMIUM BOUND
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5THP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 0.1 M TRIS, 2.65 M AMMONIUM SULPHATE
Crystal Properties Matthews coefficient Solvent content 3.52 65.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.14 α = 90 b = 131.14 β = 90 c = 251.46 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU mirrors 2010-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.35 131.14 80.3 0.157 0.181 0.087 6.8 3.3 48646
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.35 3.53 76.6 0.578 0.578 0.667 0.321 1.3 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5THP 3.35 92.9 46133 2430 79.81 0.2185 0.2154 0.2191 0.2758 0.2708 RANDOM 49.669
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.11 -1.11 2.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.745 r_dihedral_angle_4_deg 18.776 r_dihedral_angle_3_deg 18.583 r_dihedral_angle_1_deg 9.669 r_angle_refined_deg 1.408 r_angle_other_deg 1.145 r_chiral_restr 0.045 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.745 r_dihedral_angle_4_deg 18.776 r_dihedral_angle_3_deg 18.583 r_dihedral_angle_1_deg 9.669 r_angle_refined_deg 1.408 r_angle_other_deg 1.145 r_chiral_restr 0.045 r_bond_refined_d 0.005 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 21486 Nucleic Acid Atoms Solvent Atoms 7 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction XDS data reduction REFMAC phasing