6NBQ
T.elongatus NDH (data-set 1)
ELECTRON MICROSCOPY
| Sample |
|---|
| NAD(P)H dehydrogenase-like complex (NDH/NDH-1_1/NDH1L) from T.elongatus |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | FEI VITROBOT MARK IV |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | incubate on grid for 30 seconds and blot 2.5 seconds before plunging |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 81670 |
| Reported Resolution (Å) | 3.1 |
| Resolution Method | FSC 0.143 CUT-OFF |
| Other Details | |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | C1 |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (4HEA, 3C4S) | ||||
| Refinement Space | REAL | ||||
| Refinement Protocol | RIGID BODY FIT | ||||
| Refinement Target | Corelation coefficient | ||||
| Overall B Value | 30 | ||||
| Fitting Procedure | |||||
| Details | Homology models were generated from appropriate chain in 4HEA and 3C4S and rigid-body docked into the map using PHENIX. Remaining chains were built ab ... | ||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | GATAN K2 SUMMIT (4k x 4k) | ||||||||
| Electron Dose (electrons/Å**2) | 50 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | |
| Temperature (Kelvin) | |
| Microscope Model | FEI TITAN KRIOS |
| Minimum Defocus (nm) | |
| Maximum Defocus (nm) | |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2.7 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
| Nominal Magnification | |
| Calibrated Magnification | |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| PARTICLE SELECTION | Gautomatch | 0.56 |
| IMAGE ACQUISITION | SerialEM | |
| CTF CORRECTION | Gctf | 1.06 |
| CTF CORRECTION | RELION | 3.0.b2 |
| MODEL FITTING | Coot | 0.8.8 |
| MODEL FITTING | PHENIX | 1.13 |
| INITIAL EULER ASSIGNMENT | RELION | 2.1.1 |
| FINAL EULER ASSIGNMENT | RELION | 3.0.b2 |
| RECONSTRUCTION | RELION | 3.0.b2 |
| MODEL REFINEMENT | PHENIX | 1.13 |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| PHASE FLIPPING AND AMPLITUDE CORRECTION | 176592 | |||
