☰ Navigation Tabs
rat hPGDS complexed with a quinoline
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 295 0.2M NaF, 24.0%w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.39 48.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.188 α = 90 b = 80.997 β = 90 c = 97.603 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS 2010-01-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 28.29 99.3 0.075 9.5 3.48 29490
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 94.3 0.405 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 28.29 29490 1599 99.16 0.18504 0.18249 0.1945 0.23145 0.245 RANDOM 33.109
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.62 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.718 r_dihedral_angle_4_deg 16.284 r_dihedral_angle_3_deg 14.227 r_dihedral_angle_1_deg 5.858 r_long_range_B_other 5.076 r_long_range_B_refined 5.075 r_scbond_other 2.871 r_scbond_it 2.87 r_mcbond_it 2.089 r_mcbond_other 2.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.718 r_dihedral_angle_4_deg 16.284 r_dihedral_angle_3_deg 14.227 r_dihedral_angle_1_deg 5.858 r_long_range_B_other 5.076 r_long_range_B_refined 5.075 r_scbond_other 2.871 r_scbond_it 2.87 r_mcbond_it 2.089 r_mcbond_other 2.088 r_angle_refined_deg 1.341 r_angle_other_deg 0.461 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3288 Nucleic Acid Atoms Solvent Atoms 297 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling REFMAC phasing