X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH2930.2M Calcium acetate, 0.1M Tris pH 7.0, 20% (w/v) PEG 3000
Crystal Properties
Matthews coefficientSolvent content
3.5965.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 241.148α = 90
b = 241.148β = 90
c = 147.958γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCD2015-07-28MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID1.0APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
135098.917.33.762940
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
133.12

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT3.015059748318898.880.214740.213280.24153RANDOM103.378
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.99-0.49-0.993.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.551
r_dihedral_angle_3_deg16.318
r_long_range_B_refined15.553
r_long_range_B_other15.552
r_dihedral_angle_4_deg13.342
r_mcangle_it12.207
r_mcangle_other12.207
r_scangle_other11.23
r_mcbond_it8.063
r_mcbond_other8.059
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.551
r_dihedral_angle_3_deg16.318
r_long_range_B_refined15.553
r_long_range_B_other15.552
r_dihedral_angle_4_deg13.342
r_mcangle_it12.207
r_mcangle_other12.207
r_scangle_other11.23
r_mcbond_it8.063
r_mcbond_other8.059
r_scbond_it7.397
r_scbond_other7.397
r_dihedral_angle_1_deg6.93
r_angle_refined_deg1.476
r_angle_other_deg0.848
r_chiral_restr0.078
r_bond_refined_d0.011
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms15352
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing