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The structure of SB-2-204-tubulin complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 6% POLYETHYLENE GLYCOL 4000, 8% GLYCEROL, 0.1 M MES, 30 MM CACL2, 30 MM MGCL2, PH 6.7
Crystal Properties Matthews coefficient Solvent content 2.89 57.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.295 α = 90 b = 157.835 β = 90 c = 182.068 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2018-09-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.9789 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.7 0.163 22 12.8 78498
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.64 99.7 1.311 3 11.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 50 88711 4669 98.84 0.20345 0.20121 0.2052 0.24567 0.2449 RANDOM 44.872
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.01 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.685 r_dihedral_angle_4_deg 17.737 r_dihedral_angle_3_deg 15.745 r_long_range_B_refined 8.289 r_long_range_B_other 8.289 r_dihedral_angle_1_deg 7.419 r_scangle_other 5.551 r_mcangle_it 5.191 r_mcangle_other 5.191 r_scbond_it 3.421
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.685 r_dihedral_angle_4_deg 17.737 r_dihedral_angle_3_deg 15.745 r_long_range_B_refined 8.289 r_long_range_B_other 8.289 r_dihedral_angle_1_deg 7.419 r_scangle_other 5.551 r_mcangle_it 5.191 r_mcangle_other 5.191 r_scbond_it 3.421 r_scbond_other 3.421 r_mcbond_it 3.287 r_mcbond_other 3.286 r_angle_refined_deg 1.487 r_angle_other_deg 1.217 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17444 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 236
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing