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The Crystal Structure of Caldicellulosiruptor hydrothermalis Tapirin C-terminal domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 5 mM to 35 mM zinc acetate and 15% to 24% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.03 39.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.16 α = 90 b = 90.43 β = 90 c = 158.449 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Bruker Platinum 135 HELIOS MIRRORS 2017-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 55 100 0.0609 19.6 8.47 111011
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 99.8 0.6247 2.08 6.37
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 55 107765 2167 99.18 0.16896 0.1681 0.1779 0.21066 0.2169 RANDOM 25.136
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.56 -0.69 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.522 r_dihedral_angle_4_deg 15.505 r_dihedral_angle_3_deg 12.992 r_dihedral_angle_1_deg 7.468 r_long_range_B_refined 7.434 r_long_range_B_other 7.434 r_scangle_other 5.041 r_mcangle_other 3.708 r_mcangle_it 3.707 r_scbond_it 3.381
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.522 r_dihedral_angle_4_deg 15.505 r_dihedral_angle_3_deg 12.992 r_dihedral_angle_1_deg 7.468 r_long_range_B_refined 7.434 r_long_range_B_other 7.434 r_scangle_other 5.041 r_mcangle_other 3.708 r_mcangle_it 3.707 r_scbond_it 3.381 r_scbond_other 3.372 r_mcbond_it 2.659 r_mcbond_other 2.658 r_angle_refined_deg 2.008 r_angle_other_deg 1.108 r_chiral_restr 0.132 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6376 Nucleic Acid Atoms Solvent Atoms 1296 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data collection PROTEUM PLUS data reduction CRANK2 phasing