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Gluconobacter Ene-Reductase (GluER) mutant - T36A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WJS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 100 MM SODIUM ACETATE MONOHYDRATE
PH 4.6, 150 MM AMMONIUM SULFATE, 25% (W/V) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.23 44.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.475 α = 90 b = 45.154 β = 107.67 c = 163.744 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 0.9793 NSLS-II 17-ID-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.157 156 95.2 0.06 0.066 0.026 0.999 13.3 6.6 458784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.157 1.18 81 0.614 0.675 0.276 0.852 2.5 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3WJS 1.157 29.28 435695 23052 95.02 0.12426 0.12315 0.1353 0.1455 0.1565 RANDOM 12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.63 -0.28 5.99 -4.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.888 r_dihedral_angle_4_deg 17.223 r_dihedral_angle_3_deg 12.583 r_dihedral_angle_1_deg 6.733 r_rigid_bond_restr 4.172 r_long_range_B_refined 2.246 r_scangle_other 2.005 r_angle_refined_deg 1.978 r_scbond_it 1.839 r_scbond_other 1.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.888 r_dihedral_angle_4_deg 17.223 r_dihedral_angle_3_deg 12.583 r_dihedral_angle_1_deg 6.733 r_rigid_bond_restr 4.172 r_long_range_B_refined 2.246 r_scangle_other 2.005 r_angle_refined_deg 1.978 r_scbond_it 1.839 r_scbond_other 1.839 r_long_range_B_other 1.824 r_angle_other_deg 1.627 r_mcangle_other 1.29 r_mcangle_it 1.288 r_mcbond_it 1.168 r_mcbond_other 1.161 r_chiral_restr 0.12 r_gen_planes_refined 0.018 r_bond_refined_d 0.015 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10940 Nucleic Acid Atoms Solvent Atoms 1978 Heterogen Atoms 203
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing