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Crystal structure of BaeC acyltransferase from bacillaene polyketide synthase in Bacillus amyloliquefaciens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3RGI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2M Ammonium formate, 25% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.84 33.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.069 α = 90 b = 50.142 β = 90 c = 111.455 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-04-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.976 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.73 50 99.6 0.074 0.819 35.6 7 27508
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.73 1.76 99.3 0.713 0.819
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3RGI 1.73 50 26244 1399 99.66 0.19953 0.1979 0.2057 0.23034 0.2453 RANDOM 31.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.03 -0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.768 r_dihedral_angle_4_deg 16.618 r_dihedral_angle_3_deg 15.84 r_long_range_B_other 7.637 r_long_range_B_refined 7.633 r_scangle_other 6.654 r_dihedral_angle_1_deg 5.5 r_scbond_it 4.459 r_scbond_other 4.458 r_angle_other_deg 3.663
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.768 r_dihedral_angle_4_deg 16.618 r_dihedral_angle_3_deg 15.84 r_long_range_B_other 7.637 r_long_range_B_refined 7.633 r_scangle_other 6.654 r_dihedral_angle_1_deg 5.5 r_scbond_it 4.459 r_scbond_other 4.458 r_angle_other_deg 3.663 r_mcangle_it 3.2 r_mcangle_other 3.199 r_mcbond_it 2.456 r_mcbond_other 2.456 r_angle_refined_deg 1.899 r_chiral_restr 0.136 r_bond_refined_d 0.02 r_gen_planes_other 0.018 r_gen_planes_refined 0.01 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2216 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing