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Crystal structure of ketosynthase nine from bacillaene polyketide synthase in Bacillus amyloliquefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 0.2M MgCl2, 0.1M Tris pH 8.5, 20% w/v PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.45 49.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.861 α = 90 b = 116.486 β = 90 c = 141.117 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.976 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 50 98.69 0.132 0.982 18.9 6.9 97550
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.96 97.9 0.882 0.758 1.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.93 50 92470 4827 99.02 0.1837 0.18232 0.1907 0.21044 0.2171 RANDOM 26.758
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.867 r_dihedral_angle_4_deg 17.394 r_dihedral_angle_3_deg 15.979 r_long_range_B_other 6.98 r_long_range_B_refined 6.972 r_dihedral_angle_1_deg 6.073 r_scangle_other 5.975 r_scbond_it 3.918 r_scbond_other 3.917 r_angle_other_deg 3.686
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.867 r_dihedral_angle_4_deg 17.394 r_dihedral_angle_3_deg 15.979 r_long_range_B_other 6.98 r_long_range_B_refined 6.972 r_dihedral_angle_1_deg 6.073 r_scangle_other 5.975 r_scbond_it 3.918 r_scbond_other 3.917 r_angle_other_deg 3.686 r_mcangle_it 3.397 r_mcangle_other 3.397 r_mcbond_it 2.443 r_mcbond_other 2.44 r_angle_refined_deg 1.904 r_chiral_restr 0.155 r_gen_planes_other 0.022 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8278 Nucleic Acid Atoms Solvent Atoms 401 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing