☰ Navigation Tabs
X-ray structure of monomeric near-infrared fluorescent protein miRFP670nano
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 293 0.1M Na Acetate pH 4.0, 10mM EDTA, 10% isopropanol, 22% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.53 51.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 187.598 α = 90 b = 72.124 β = 129.99 c = 136.698 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2018-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30 98.5 0.097 0.113 0.058 7.8 3.7 100484
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.02 97.6 0.557 0.661 0.353 0.762 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 30 99377 1106 98.39 0.1831 0.1825 0.1924 0.2392 0.247 RANDOM 26.903
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 -0.82 0.4 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.036 r_dihedral_angle_4_deg 22.769 r_dihedral_angle_3_deg 16.223 r_dihedral_angle_1_deg 7.381 r_angle_refined_deg 2.415 r_angle_other_deg 1.215 r_chiral_restr 0.147 r_bond_refined_d 0.019 r_gen_planes_other 0.015 r_gen_planes_refined 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.036 r_dihedral_angle_4_deg 22.769 r_dihedral_angle_3_deg 16.223 r_dihedral_angle_1_deg 7.381 r_angle_refined_deg 2.415 r_angle_other_deg 1.215 r_chiral_restr 0.147 r_bond_refined_d 0.019 r_gen_planes_other 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9697 Nucleic Acid Atoms Solvent Atoms 584 Heterogen Atoms 376
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction MOLREP phasing