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RFXANK ankyrin repeats in complex with a RFX7 peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3UXG selected coordinates from pdb entry 3uxg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 25% PEG-3350, 0.2 M ammonium acetate, 0.1 M bis-tris
Crystal Properties Matthews coefficient Solvent content 2.3 46.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.23 α = 90 b = 29.87 β = 102.12 c = 97.89 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS HTC 2013-05-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 34.71 98.7 0.062 0.067 0.025 0.999 19.5 6.9 35385
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.81 94.1 0.499 0.541 0.206 0.876 6.5 1858
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT selected coordinates from pdb entry 3uxg 1.78 34.7 33205 1957 98.69 0.1782 0.1759 0.1847 0.2187 0.2258 thin shells (sftools) 19.283
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.78 -0.29 0.24 0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.094 r_dihedral_angle_3_deg 12.081 r_dihedral_angle_4_deg 11.916 r_dihedral_angle_1_deg 6.352 r_mcangle_it 3.397 r_mcbond_it 2.705 r_mcbond_other 2.703 r_angle_refined_deg 1.853 r_angle_other_deg 1.518 r_chiral_restr 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.094 r_dihedral_angle_3_deg 12.081 r_dihedral_angle_4_deg 11.916 r_dihedral_angle_1_deg 6.352 r_mcangle_it 3.397 r_mcbond_it 2.705 r_mcbond_other 2.703 r_angle_refined_deg 1.853 r_angle_other_deg 1.518 r_chiral_restr 0.1 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2709 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing