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p97 D1D2 with CB5083 bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 289 0.1 M sodium citrate, pH 4.5, 250 mM Tri-sodium citrate and 15 % PEG3350
Crystal Properties Matthews coefficient Solvent content 3.33 63.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.41 α = 90 b = 263.83 β = 103.67 c = 164.13 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-04-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.77 50 83.9 9.91 3.8 89790
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.77 3.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.77 35.03 71561 3737 71.21 0.22448 0.22238 0.2266 0.26452 0.2595 RANDOM 191.093
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.52 -1.33 -4.04 2.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.346 r_long_range_B_refined 24.4 r_long_range_B_other 24.4 r_dihedral_angle_3_deg 18.596 r_scangle_other 16.781 r_mcangle_it 16.716 r_mcangle_other 16.715 r_dihedral_angle_4_deg 16.412 r_dihedral_angle_1_deg 11.805 r_mcbond_it 10.232
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.346 r_long_range_B_refined 24.4 r_long_range_B_other 24.4 r_dihedral_angle_3_deg 18.596 r_scangle_other 16.781 r_mcangle_it 16.716 r_mcangle_other 16.715 r_dihedral_angle_4_deg 16.412 r_dihedral_angle_1_deg 11.805 r_mcbond_it 10.232 r_mcbond_other 10.232 r_scbond_it 9.862 r_scbond_other 9.862 r_angle_refined_deg 1.289 r_angle_other_deg 0.892 r_chiral_restr 0.06 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 48036 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms 372
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing