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HBO1 is required for the maintenance of leukaemia stem cells
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Protein at 2.5 mg/mL was added in equal volume ratio with reservoir, 200 nL plus 200 nL. The reservoir consisted of 22% PEG MME 2000 plus 57 mM diammonium tartrate. Plates were stored at 20 C.
Crystal Properties Matthews coefficient Solvent content 2.35 47.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.628 α = 90 b = 39.026 β = 99.59 c = 107.765 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2018-03-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.953736 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.13 43.2 98 0.07 0.029 0.998 13.1 6.9 19938
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.13 2.19 94.2 0.748 0.31 0.882 2.6 6.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.13 43.2 18965 972 97.34 0.21629 0.21366 0.2221 0.26434 0.2779 RANDOM 59.159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.5 -2.54 6.28 -2.77
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.43 r_dihedral_angle_3_deg 16.355 r_dihedral_angle_4_deg 16.306 r_long_range_B_refined 9.549 r_long_range_B_other 9.549 r_dihedral_angle_1_deg 6.757 r_scangle_other 6.186 r_mcangle_it 5.466 r_mcangle_other 5.464 r_scbond_it 4.049
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.43 r_dihedral_angle_3_deg 16.355 r_dihedral_angle_4_deg 16.306 r_long_range_B_refined 9.549 r_long_range_B_other 9.549 r_dihedral_angle_1_deg 6.757 r_scangle_other 6.186 r_mcangle_it 5.466 r_mcangle_other 5.464 r_scbond_it 4.049 r_scbond_other 4.047 r_mcbond_it 3.831 r_mcbond_other 3.824 r_angle_refined_deg 1.204 r_angle_other_deg 0.778 r_chiral_restr 0.057 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2436 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing