☰ Navigation Tabs
Collagen peptide containing aza-proline and aza-glycine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5K86
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 277 0.1 M Tris-HCl, 0.01 M Li2SO4 monohydrate, 30% (w/v) PEG4000
Crystal Properties Matthews coefficient Solvent content 1.79 31.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.538 α = 90 b = 18.175 β = 91.92 c = 48.834 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 48.81 98.59 0.03126 0.04421 0.03126 0.997 9.92 2 19847 10.84
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.139 98.76 0.4266 0.6033 0.4266 0.627 1.9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5K86 1.1 48.807 1.34 19818 917 98.59 0.1186 0.1172 0.1185 0.1443 0.1443 17.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.412 f_angle_d 1.964 f_chiral_restr 0.082 f_plane_restr 0.043 f_bond_d 0.025
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 468 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 9
Software Software Software Name Purpose PHENIX refinement Coot model building XDS data reduction SCALA data scaling pointless data scaling PHASER phasing