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SspA in complex with cysteine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3VAX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 287.15 1.8M ammonium citrate, pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.46 50.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 132.264 α = 90 b = 132.264 β = 90 c = 152.636 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS PILATUS 2M 2016-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9789 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 115 100 0.962 5.3 12.5 72776
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 0.962
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3VAX 1.8 114.54 68787 3655 99.16 0.167 0.1657 0.1621 0.1902 0.1886 RANDOM 22.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.42 -0.71 -1.42 2.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.282 r_sphericity_free 30.401 r_dihedral_angle_4_deg 20.6 r_dihedral_angle_3_deg 17.076 r_sphericity_bonded 16.977 r_dihedral_angle_1_deg 6.871 r_rigid_bond_restr 1.973 r_angle_refined_deg 1.765 r_chiral_restr 0.144 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.282 r_sphericity_free 30.401 r_dihedral_angle_4_deg 20.6 r_dihedral_angle_3_deg 17.076 r_sphericity_bonded 16.977 r_dihedral_angle_1_deg 6.871 r_rigid_bond_restr 1.973 r_angle_refined_deg 1.765 r_chiral_restr 0.144 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5297 Nucleic Acid Atoms Solvent Atoms 863 Heterogen Atoms 44
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction PHENIX phasing