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Co- Carbonic Anhydrase II pH 11.0 20 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5YUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.1 41.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.358 α = 90 b = 41.458 β = 104.02 c = 72.307 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9793 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 94.6 0.058 0.062 0.023 0.998 31.8 7.6 72173
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 91.2 0.424 0.455 0.165 0.922 5.6 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5YUK 1.2 30 72158 3699 94.594 0.114 0.1125 0.1124 0.1394 0.1393 13.542
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.116 0.015 -0.111 -0.011
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.976 r_dihedral_angle_2_deg 34.742 r_dihedral_angle_4_deg 23.27 r_sphericity_bonded 13.279 r_dihedral_angle_3_deg 11.944 r_dihedral_angle_1_deg 7.033 r_rigid_bond_restr 6.207 r_lrange_it 5.699 r_lrange_other 4.897 r_scangle_it 3.635
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.976 r_dihedral_angle_2_deg 34.742 r_dihedral_angle_4_deg 23.27 r_sphericity_bonded 13.279 r_dihedral_angle_3_deg 11.944 r_dihedral_angle_1_deg 7.033 r_rigid_bond_restr 6.207 r_lrange_it 5.699 r_lrange_other 4.897 r_scangle_it 3.635 r_scangle_other 3.625 r_scbond_it 3.189 r_scbond_other 3.186 r_mcangle_other 3.039 r_mcangle_it 3.026 r_mcbond_it 2.562 r_angle_refined_deg 2.358 r_mcbond_other 2.27 r_angle_other_deg 1.187 r_symmetry_nbd_refined 0.31 r_nbd_refined 0.305 r_symmetry_xyhbond_nbd_other 0.302 r_nbd_other 0.256 r_metal_ion_refined 0.214 r_xyhbond_nbd_refined 0.206 r_chiral_restr 0.193 r_symmetry_nbd_other 0.187 r_nbtor_refined 0.185 r_symmetry_xyhbond_nbd_refined 0.166 r_symmetry_nbtor_other 0.087 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing