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Co- Carbonic Anhydrase II pH 11.0 0 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5YUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 11 293 1.3 M sodium citrate, 50 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.08 40.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.33 α = 90 b = 41.259 β = 104.127 c = 72.083 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-12-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 7A (6B, 6C1) 0.9793 PAL/PLS 7A (6B, 6C1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 30 95 0.085 0.091 0.033 0.995 23 7.6 71904
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 91.7 0.464 0.497 0.179 0.909 4.3 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5YUK 1.2 30 71822 3686 94.966 0.124 0.1229 0.1489 0.1551 13.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.022 -0.07 0.032 0.023
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.488 r_dihedral_angle_2_deg 36.164 r_dihedral_angle_4_deg 24.712 r_dihedral_angle_3_deg 11.863 r_sphericity_bonded 10.853 r_dihedral_angle_1_deg 6.637 r_rigid_bond_restr 6.027 r_lrange_it 4.626 r_lrange_other 4.493 r_scangle_it 3.948
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 37.488 r_dihedral_angle_2_deg 36.164 r_dihedral_angle_4_deg 24.712 r_dihedral_angle_3_deg 11.863 r_sphericity_bonded 10.853 r_dihedral_angle_1_deg 6.637 r_rigid_bond_restr 6.027 r_lrange_it 4.626 r_lrange_other 4.493 r_scangle_it 3.948 r_scangle_other 3.947 r_scbond_it 3.379 r_scbond_other 3.378 r_angle_refined_deg 2.484 r_mcangle_other 2.107 r_mcangle_it 2.055 r_mcbond_it 1.583 r_mcbond_other 1.456 r_angle_other_deg 1.309 r_symmetry_nbd_refined 0.336 r_nbd_other 0.336 r_nbd_refined 0.287 r_symmetry_xyhbond_nbd_refined 0.214 r_chiral_restr 0.211 r_symmetry_nbd_other 0.192 r_nbtor_refined 0.186 r_xyhbond_nbd_refined 0.156 r_metal_ion_refined 0.107 r_symmetry_nbtor_other 0.086 r_bond_refined_d 0.031 r_gen_planes_refined 0.015 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_symmetry_xyhbond_nbd_other 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing