Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
SOLUTION STRUCTURE OF THE YTH DOMAIN IN YTH DOMAIN-2 CONTAINING PROTEIN 2
SOLUTION NMR
NMR Experiment
Experiment
Type
Sample Contents
Solvent
Ionic Strength
pH
Pressure
Temperature (K)
Spectrometer
1
3D_13C,15N-SEPARATED_NOESY SPECTRA
1.0 mg/mL [U-99% 13C; U-99% 15N] helicase
90% H2O/10% D2O
100 mM
7.0
1 atm
298
Bruker AVANCE 800
NMR Spectrometer Information
Spectrometer
Manufacturer
Model
Field Strength
1
Bruker
AVANCE
800
NMR Refinement
Method
Details
Software
simulated annealing
the structures are based on 3191 NOE-derived distance contrrains, 71 main chain dihedral angle constraints based on TALOS program and 51 side chain dihedral constraints based on NOE pattern.
Amber
NMR Ensemble Information
Conformer Selection Criteria
structures with favorable non-bond energy
Conformers Calculated Total Number
200
Conformers Submitted Total Number
20
Representative Model
1 (lowest energy)
Computation: NMR Software
#
Classification
Version
Software Name
Author
1
refinement
Amber
12
Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman