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crystal structure of alpha-momorcharin in complex with cAMP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F8Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.2 M Magnesium Acetate, 20% PEG 8000, 0.1 M Sodium cacodylate, pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.06 40.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.471 α = 90 b = 130.471 β = 90 c = 39.673 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 50 96 0.08 0.092 0.044 0.992 14.2 5 55352
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.38 0.943 0.46 0.683 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1F8Q 1.331 24.604 55352 2788 95.879 0.218 0.2157 0.2208 0.2572 0.2525 25.452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.802 -0.401 -0.802 2.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.863 r_dihedral_angle_4_deg 23.999 r_dihedral_angle_3_deg 12.973 r_dihedral_angle_1_deg 5.838 r_lrange_it 4.49 r_lrange_other 4.489 r_scangle_it 2.668 r_scangle_other 2.667 r_scbond_it 1.722 r_scbond_other 1.722
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.863 r_dihedral_angle_4_deg 23.999 r_dihedral_angle_3_deg 12.973 r_dihedral_angle_1_deg 5.838 r_lrange_it 4.49 r_lrange_other 4.489 r_scangle_it 2.668 r_scangle_other 2.667 r_scbond_it 1.722 r_scbond_other 1.722 r_mcangle_it 1.641 r_mcangle_other 1.641 r_angle_refined_deg 1.511 r_angle_other_deg 1.425 r_mcbond_it 1.101 r_mcbond_other 1.1 r_nbd_refined 0.21 r_symmetry_nbd_other 0.174 r_nbtor_refined 0.17 r_nbd_other 0.167 r_symmetry_xyhbond_nbd_refined 0.126 r_xyhbond_nbd_refined 0.109 r_symmetry_nbtor_other 0.082 r_chiral_restr 0.072 r_symmetry_nbd_refined 0.06 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1932 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 22
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing