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Solution NMR structure cold shock domain of YB1 from Homo sapiens
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 2 2D 1H-13C HSQC aliphatic 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 3 2D 1H-13C HSQC aromatic 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 4 3D HNCO 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 5 3D HNCA 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 6 3D HN(CO)CA 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 7 3D CBCA(CO)NH 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 8 3D HNCACB 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 9 3D HBHA(CO)NH 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 10 3D HCCH-TOCSY 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 11 3D HCCH-COSY 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 12 3D C(CO)NH 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 600 13 3D 1H-13C NOESY aliphatic 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 14 3D 1H-13C NOESY aromatic 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 15 3D 1H-15N NOESY 0.8 mM [U-100% 13C; U-100% 15N] YB1 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600 2 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing eefx force-field X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment Sparky Goddard 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 peak picking NMRFAM-SPARKY Lee W, Tonelli M, Markley JL