☰ Navigation Tabs
Solution structure of cold shock domain and ssDNA complex
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 2 2D 1H-13C HSQC aliphatic 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 3 3D HNCA 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 4 3D HN(CO)CA 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 5 3D HCCH-TOCSY 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 6 4D NOESY 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 7 3D filtered NOEST 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 8 2D 13C/15N filtered TOCSY 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800 9 2D 13C/15N filtered NOESY 1 mM [U-100% 13C; U-100% 15N] csd 90% H2O/10% D2O 50 mM 7.4 1 atm 298 Bruker AVANCE 800
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (medoid)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis Sparky Goddard 4 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 5 refinement X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 6 chemical shift assignment Sparky Goddard 7 peak picking Sparky Goddard