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Cry3Aa protein for enzyme entrapment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DLC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 291 0.1M NaOAc pH 4.8, 2.2M NaCl
Crystal Properties Matthews coefficient Solvent content 2.71 59.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.35 α = 90 b = 132.61 β = 90 c = 102.89 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2019-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE TPS 05A 1.0 NSRRC TPS 05A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.31 87.46 98.9 0.141 0.163 0.08 0.979 7.7 3.9 12048
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.31 3.58 99.8 0.285 0.33 0.162 0.918 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DLC 3.31 38.34 11416 615 98.73 0.1594 0.1566 0.1618 0.2089 0.205 RANDOM 33.788
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 0.04 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.296 r_dihedral_angle_4_deg 21.591 r_dihedral_angle_3_deg 20.506 r_dihedral_angle_1_deg 8.129 r_angle_refined_deg 1.714 r_angle_other_deg 1.047 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.296 r_dihedral_angle_4_deg 21.591 r_dihedral_angle_3_deg 20.506 r_dihedral_angle_1_deg 8.129 r_angle_refined_deg 1.714 r_angle_other_deg 1.047 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4676 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing