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Cu(II) loaded Tegillarca granosa M-ferritin soaked with Fe(II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3A9K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 0.2M ammonium acetate, 0.1M TRIS hydrochloride pH 7.5, a precipitant solution of 30% v/v 2-Propanol
Crystal Properties Matthews coefficient Solvent content 3.8 67.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 217.288 α = 90 b = 217.288 β = 90 c = 134.083 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2018-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 1.73890 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.9 50 94 0.167 0.167 10.357 3.5 10532 -3 72.3114190968
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.9 3.97 73.4 0.523 0.523 1.8 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3A9K 3.90270963518 36.3993584617 1.34370859458 10486 581 93.8764547896 0.191065939557 0.186963347959 0.1897 0.263535661722 0.2658 65.1958603175
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.0944369923 f_angle_d 0.50340236861 f_chiral_restr 0.035706453338 f_plane_restr 0.00280784595789 f_bond_d 0.00262382220269
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5153 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 8
Software Software Software Name Purpose PHENIX refinement xia2 data reduction HKL-3000 data scaling BALBES phasing