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Crystal structure of Aspergillus fumigatus mitochondrial acetyl-CoA acetyltransferase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F2S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.1 M HEPES pH 7.0, 2 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.87 57.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.513 α = 90 b = 174.78 β = 90 c = 179.12 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2015-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.41 48.84 97 0.053 13.7 3.93 73595
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.41 2.469 0.559
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2F2S 2.41 48.84 71496 2100 97 0.2018 0.2003 0.2045 0.2524 0.2464 RANDOM 62.45
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.79 0.33 -6.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.498 r_dihedral_angle_4_deg 18.466 r_dihedral_angle_3_deg 18.388 r_dihedral_angle_1_deg 7.299 r_mcangle_it 6.917 r_mcbond_it 4.813 r_mcbond_other 4.807 r_angle_other_deg 2.396 r_angle_refined_deg 1.564 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.498 r_dihedral_angle_4_deg 18.466 r_dihedral_angle_3_deg 18.388 r_dihedral_angle_1_deg 7.299 r_mcangle_it 6.917 r_mcbond_it 4.813 r_mcbond_other 4.807 r_angle_other_deg 2.396 r_angle_refined_deg 1.564 r_chiral_restr 0.076 r_bond_other_d 0.036 r_bond_refined_d 0.007 r_gen_planes_other 0.007 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11776 Nucleic Acid Atoms Solvent Atoms 132 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing