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Crystal structure of Ankyrin B/NdeL1 complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5.6 289 1.9M ammonium sulfate,
0.16M potassium sodium tartrate tetrahydrate,
0.1M sodium citrate tribasic dehydrate pH 5.6
Crystal Properties Matthews coefficient Solvent content 1.88 34.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.446 α = 90 b = 44.69 β = 90 c = 77.88 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-11-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.97852 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 95 0.059 0.062 0.019 5.7 10.7 22182
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 99.9 0.435 0.456 0.136 0.966 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION AB INITIO PHASING THROUGHOUT 1.5 10 20976 1063 94.53 0.1628 0.1605 0.1854 0.2108 0.2207 RANDOM 22.795
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 -0.56 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.592 r_dihedral_angle_4_deg 21.359 r_dihedral_angle_3_deg 13.161 r_dihedral_angle_1_deg 4.796 r_rigid_bond_restr 1.691 r_angle_refined_deg 1.633 r_angle_other_deg 1.599 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.008
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.592 r_dihedral_angle_4_deg 21.359 r_dihedral_angle_3_deg 13.161 r_dihedral_angle_1_deg 4.796 r_rigid_bond_restr 1.691 r_angle_refined_deg 1.633 r_angle_other_deg 1.599 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1100 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction Arcimboldo phasing