☰ Navigation Tabs
Crystal structure of Shank3 NTD-ANK A42K mutant in complex with HRas
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5G4X 5G4X, 6AMB experimental model PDB 6AMB 5G4X, 6AMB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8.5 289 0.1M bicine (pH8.5), 3% Dextran sulfate sodium salt, 15% PEG 20000
Crystal Properties Matthews coefficient Solvent content 2.9 57.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.569 α = 90 b = 154.464 β = 108.35 c = 116.949 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2018-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL19U1 0.91904 SSRF BL19U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 50 99.3 0.232 0.276 0.147 2.2 3.4 40509
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.36 98.9 0.737 0.884 0.483 0.546 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5G4X, 6AMB 3.3 46.75 38498 1980 98.61 0.2283 0.2269 0.2271 0.2567 0.2541 RANDOM 53.413
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.03 -0.89 -0.88 2.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.352 r_dihedral_angle_3_deg 23.59 r_dihedral_angle_4_deg 20.813 r_dihedral_angle_1_deg 4.925 r_angle_other_deg 1.537 r_angle_refined_deg 1.482 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.352 r_dihedral_angle_3_deg 23.59 r_dihedral_angle_4_deg 20.813 r_dihedral_angle_1_deg 4.925 r_angle_other_deg 1.537 r_angle_refined_deg 1.482 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16297 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing PDB_EXTRACT data extraction