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Notothenia coriiceps TRAF5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293.15 20%(w/v) PEG-6000, 0.1M HEPES pH 7.0, 0.2M Sodium chloride
Crystal Properties Matthews coefficient Solvent content 3.44 64.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.544 α = 90 b = 85.544 β = 90 c = 148.598 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 125 PIXEL DECTRIS EIGER X 9M 2019-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 1.0000 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.299 42.81 100 0.201 19.16 18.5 9935
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.299 7.39 1.704
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.299 42.804 9931 984 99.769 0.25 0.2461 0.2438 0.2865 0.279 80.209
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.061 0.031 0.061 -0.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.444 r_dihedral_angle_3_deg 18.733 r_dihedral_angle_4_deg 18.649 r_lrange_it 9.675 r_lrange_other 9.674 r_scangle_other 7.574 r_scangle_it 7.572 r_mcangle_other 7.347 r_mcangle_it 7.346 r_dihedral_angle_1_deg 5.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.444 r_dihedral_angle_3_deg 18.733 r_dihedral_angle_4_deg 18.649 r_lrange_it 9.675 r_lrange_other 9.674 r_scangle_other 7.574 r_scangle_it 7.572 r_mcangle_other 7.347 r_mcangle_it 7.346 r_dihedral_angle_1_deg 5.09 r_scbond_it 4.949 r_scbond_other 4.947 r_mcbond_it 4.748 r_mcbond_other 4.724 r_angle_other_deg 1.529 r_angle_refined_deg 1.404 r_symmetry_nbd_refined 0.434 r_nbd_other 0.409 r_symmetry_nbd_other 0.244 r_nbd_refined 0.209 r_xyhbond_nbd_refined 0.206 r_nbtor_refined 0.179 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.068 r_symmetry_xyhbond_nbd_other 0.012 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3052 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing