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Human Carbonic Anhydrase II native 00 atm CO2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5YUK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 1.3 M sodium citrate, 100 mM Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.07 40.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.143 α = 90 b = 41.198 β = 104.172 c = 72.112 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 270 2019-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.8856 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 30 94.6 0.07 24.67 7 80785
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.17 0.195 11.87
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 5YUK 1.15 29.011 80768 3917 94.6 0.105 0.1036 0.1038 0.1278 0.1277 13.117
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.001 0.001 0.002 -0.001
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.664 r_dihedral_angle_2_deg 35.693 r_dihedral_angle_4_deg 23.308 r_dihedral_angle_3_deg 11.972 r_sphericity_bonded 10.536 r_rigid_bond_restr 6.91 r_dihedral_angle_1_deg 6.899 r_lrange_it 4.337 r_lrange_other 4.209 r_scangle_it 3.949
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 38.664 r_dihedral_angle_2_deg 35.693 r_dihedral_angle_4_deg 23.308 r_dihedral_angle_3_deg 11.972 r_sphericity_bonded 10.536 r_rigid_bond_restr 6.91 r_dihedral_angle_1_deg 6.899 r_lrange_it 4.337 r_lrange_other 4.209 r_scangle_it 3.949 r_scangle_other 3.948 r_scbond_it 3.337 r_scbond_other 3.337 r_mcangle_other 2.715 r_mcangle_it 2.608 r_angle_refined_deg 2.456 r_mcbond_it 2.041 r_mcbond_other 1.896 r_angle_other_deg 1.878 r_nbd_other 0.417 r_symmetry_nbd_refined 0.345 r_nbd_refined 0.278 r_symmetry_nbd_other 0.215 r_symmetry_xyhbond_nbd_refined 0.192 r_nbtor_refined 0.19 r_chiral_restr 0.172 r_xyhbond_nbd_refined 0.129 r_symmetry_nbtor_other 0.085 r_metal_ion_refined 0.071 r_bond_refined_d 0.031 r_gen_planes_refined 0.014 r_gen_planes_other 0.01 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2049 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing