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Structure of mosquito-larvicidal Binary toxin receptor, Cqm1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3WY1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295 5mM CoCl2, 5mM CdCl2, 5mM MgCl2,
5mM NiCl2, 0.1mM HEPES pH 7.5,
12% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.24 48.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.181 α = 90 b = 191.486 β = 90 c = 205.332 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2018-10-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON RRCAT INDUS-2 BEAMLINE PX-BL21 0.9795 RRCAT INDUS-2 PX-BL21
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.805 39.23 93.9 0.072 0.09 0.044 0.998 14.4 7.1 201511
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.805 1.9 99.9 0.532 0.621 0.318 0.929 2.8 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3WY1 1.805 29.828 1.34 200966 9858 93.69 0.1851 0.183 0.1838 0.227 0.2256 Random Selelction
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.072 f_angle 0.821 f_chiral_restr 0.053 f_bond 0.006 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17178 Nucleic Acid Atoms Solvent Atoms 2304 Heterogen Atoms 44
Software Software Software Name Purpose PHENIX refinement XDS data reduction autoPROC data scaling PHASER phasing DM phasing