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Solution structure of camelid nanobody Nb11 against aflatoxin B1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 2 2D 1H-13C HSQC 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 6 2D 1H-13C HSQC aromatic 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 3 3D HNCO 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 4 3D HN(CA)CO 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 5 3D HNCA 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 7 3D HN(CO)CA 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 8 3D CBCA(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 9 3D HNCACB 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 10 3D HBHA(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 11 3D C(CO)NH 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 12 3D H(CCO)NH 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 13 3D HCCH-TOCSY 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 600 14 3D 1H-15N NOESY 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 850 15 3D 1H-13C NOESY aliphatic 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 850 16 3D 1H-13C NOESY aromatic 0.6 mM [U-100% 13C; U-100% 15N] camelid nanobody 11 90% H2O/10% D2O 0.15 M 7.0 1 atm 298 Bruker AVANCE III 850
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 600 2 Bruker AVANCE III 850
NMR Refinement Method Details Software simulated annealing Sparky
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard