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NAD+ bound structure of enoyl-acyl carrier protein reductase (FabI) from Acinetobacter baumanii
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NQZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 287 0.1 M HEPES pH 7.0 , 7% MPD
Crystal Properties Matthews coefficient Solvent content 2.71 54.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.183 α = 90 b = 83.183 β = 90 c = 174.24 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-10-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.97940 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 96.1 0.058 0.066 0.032 17.4 3.7 28104
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.85 91 0.373 0.462 0.267 0.307 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4NQZ 2.8 40.49 26696 1388 96.2 0.2228 0.2192 0.2166 0.2908 0.2859 RANDOM 94.151
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.224 r_dihedral_angle_4_deg 17.684 r_dihedral_angle_3_deg 14.77 r_dihedral_angle_1_deg 7.064 r_angle_refined_deg 1.362 r_angle_other_deg 1.329 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.224 r_dihedral_angle_4_deg 17.684 r_dihedral_angle_3_deg 14.77 r_dihedral_angle_1_deg 7.064 r_angle_refined_deg 1.362 r_angle_other_deg 1.329 r_chiral_restr 0.058 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7820 Nucleic Acid Atoms Solvent Atoms 8 Heterogen Atoms 176
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling HKL-2000 data collection HKL-2000 data reduction MOLREP phasing