☰ Navigation Tabs
S-formylglutathione hydrolase homolog from a psychrophilic bacterium of Shewanella frigidimarina
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 0.2 M lithium chloride and 16% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 1.9 35.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.356 α = 90 b = 76.594 β = 105.32 c = 64.725 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 5C (4A) 0.9796 PAL/PLS 5C (4A)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.32 50 97 42.7 3.5 19691
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.32 2.36
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.32 33.81 18706 964 96.92 0.16139 0.15753 0.1642 0.23523 0.2372 RANDOM 25.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.077 r_dihedral_angle_4_deg 19.719 r_dihedral_angle_3_deg 17.343 r_dihedral_angle_1_deg 8.029 r_long_range_B_refined 5.674 r_long_range_B_other 5.617 r_scangle_other 4.261 r_mcangle_it 3.266 r_mcangle_other 3.263 r_scbond_it 2.698
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.077 r_dihedral_angle_4_deg 19.719 r_dihedral_angle_3_deg 17.343 r_dihedral_angle_1_deg 8.029 r_long_range_B_refined 5.674 r_long_range_B_other 5.617 r_scangle_other 4.261 r_mcangle_it 3.266 r_mcangle_other 3.263 r_scbond_it 2.698 r_scbond_other 2.697 r_mcbond_it 2.139 r_mcbond_other 2.126 r_angle_refined_deg 1.596 r_angle_other_deg 1.337 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4341 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MxDC data collection