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structure of RET G-quadruplex in complex with colchicine
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 0.8 mM RET G4-DNA, 0.96 mM COLCHICINE, 20 mM Potassium Phosphate Monobasic, 80 mM potassium chloride 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Agilent INOVA 600 2 2D 1H-1H TOCSY 0.8 mM RET G4-DNA, 0.96 mM COLCHICINE, 20 mM Potassium Phosphate Monobasic, 80 mM potassium chloride 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Agilent INOVA 600 3 2D DQF-COSY 0.8 mM RET G4-DNA, 0.96 mM COLCHICINE, 20 mM Potassium Phosphate Monobasic, 80 mM potassium chloride 90% H2O/10% D2O 100 mM 6.8 1 atm 293 Agilent INOVA 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Agilent INOVA 600
NMR Refinement Method Details Software simulated annealing X-PLOR NIH
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (closest to the average)
Computation: NMR Software # Classification Version Software Name Author 1 refinement CNS Brunger A. T. et.al. 2 structure calculation X-PLOR NIH Schwieters, Kuszewski, Tjandra and Clore 3 chemical shift assignment Sparky Goddard 4 processing NMRDraw Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax